STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bcop_1830KEGG: bth:BT_3313 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504107546. (457 aa)    
Predicted Functional Partners:
Bcop_1829
InterPro IPR012944; KEGG: dfe:Dfer_5600 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; IMG reference gene:2504107545; PFAM: SusD family.
       0.705
Bcop_1828
TonB-dependent receptor plug; InterPro IPR011662:IPR012910:IPR000531; KEGG: bth:BT_3310 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal; SPTR: Outer membrane receptor RagA protein; IMG reference gene:2504107544; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
       0.681
Bcop_1831
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: dfe:Dfer_4327 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Glycosyl hydrolase family 20, catalytic domain protein; IMG reference gene:2504107547; PFAM: Putative carbohydrate binding domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain.
       0.526
Bcop_1832
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883; KEGG: sli:Slin_3893 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; IMG reference gene:2504107548; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
       0.526
Bcop_1833
Putative transmembrane protein; COGs: COG4299 conserved hypothetical protein; KEGG: bfs:BF0369 putative transmembrane protein; SPTR: Putative membrane protein; IMG reference gene:2504107549; PFAM: Protein of unknown function (DUF1624).
       0.526
Bcop_1827
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_3132 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107543; PFAM: FecR protein.
       0.497
Bcop_1826
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: pdi:BDI_3108 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; IMG reference gene:2504107542; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase [...]
       0.461
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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