STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1891KEGG: bvu:BVU_0200 putative alcohol dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107607. (73 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
    0.727
Bcop_1890
KEGG: fjo:Fjoh_4853 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107606.
       0.686
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
   
 
 0.647
Bcop_1057
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR002872:IPR015590; KEGG: bvu:BVU_3604 putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; PFAM: Aldehyde dehydrogenase domain; Proline dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106759; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
  
 
 0.478
Bcop_1603
Hypothetical protein; InterPro IPR013954; KEGG: pan:PODANSg1088 hypothetical protein; SPTR: Predicted CDS Pa_5_2490; IMG reference gene:2504107318; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: DNA 3'-phosphatase; HAD-superfamily hydrolase, subfamily IIIA.
  
 
 0.467
Bcop_1892
Endonuclease/exonuclease/phosphatase; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: pdi:BDI_1671 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; IMG reference gene:2504107608; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.455
Bcop_1275
Saccharopine dehydrogenase; InterPro IPR005097; KEGG: bwe:BcerKBAB4_0839 NAD-dependent epimerase/dehydratase; PFAM: Saccharopine dehydrogenase / Homospermidine synthase; SPTR: NAD-dependent epimerase/dehydratase; IMG reference gene:2504106981; PFAM: NmrA-like family.
   
    0.438
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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