STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1925Hypothetical protein; KEGG: bcb:BCB4264_A1654 conserved repeat domain protein; SPTR: Cell surface protein; IMG reference gene:2504107641. (566 aa)    
Predicted Functional Partners:
Bcop_1924
Hypothetical protein; IMG reference gene:2504107640.
       0.773
Bcop_1927
KEGG: bwe:BcerKBAB4_5439 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107643.
  
  0.624
Bcop_1342
KEGG: bvu:BVU_1378 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107051.
  
 
 0.545
Bcop_0968
Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: bfs:BF2635 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM-repeat proteins and domains; IMG reference gene:2504106669; PFAM: LppC putative lipoprotein; LysM domain.
    
 0.502
Bcop_1922
Hypothetical protein; KEGG: pfh:PFHG_03876 conserved hypothetical protein; SPTR: Conserved Plasmodium protein; IMG reference gene:2504107638.
       0.499
Bcop_1923
Hypothetical protein; KEGG: cpr:CPR_1839 teichoic acid biosynthesis protein A; SPTR: Putative uncharacterized protein; IMG reference gene:2504107639.
       0.499
Bcop_0264
Cell cycle protein; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: bth:BT_3449 rod shape-determining protein RodA; PFAM: Cell cycle protein; SPTR: Rod shape-determining protein RodA; IMG reference gene:2504105923; PFAM: Cell cycle protein; Belongs to the SEDS family.
   
   0.486
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.471
Bcop_1926
Hypothetical protein; KEGG: saj:SaurJH9_0086 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107642.
       0.468
Bcop_0090
KEGG: bth:BT_2996 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105746.
   
 
 0.467
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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