Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_1964dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888:IPR001509; KEGG: bvu:BVU_2405 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; IMG reference gene:2504107680; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (355 aa)    
Predicted Functional Partners:
Bcop_1965
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 
 0.999
Bcop_1378
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
 0.997
Bcop_2046
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
 0.977
Bcop_0923
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
 0.974
Bcop_1963
DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfr:BF2581 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107679; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.949
Bcop_1960
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pmz:HMPREF0659_A5896 NAD dependent epimerase/dehydratase family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Putative NDP-sugar dehydratase or epimerase; IMG reference gene:2504107676; PFAM: NAD dependent epimerase/dehydratase family.
 
 
 0.947
Bcop_1022
Nucleotide sugar dehydrogenase; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: bfr:BF2297 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Putative uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; IMG reference gene:2504106724; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase fa [...]
  
 
 0.928
Bcop_1962
ATP-grasp fold domain protein, DUF201-type; COGs: COG0439 Biotin carboxylase; InterPro IPR003806; KEGG: bth:BT_3374 putative carbamoyl-phosphate-synthetase; PFAM: ATP-grasp fold, DUF201-type; SPTR: Putative carbamoyl-phosphate-synthetase; IMG reference gene:2504107678; PFAM: D-ala D-ala ligase C-terminus; overlaps another CDS with the same product name.
 
    0.832
Bcop_1959
InterPro IPR001173; KEGG: bth:BT_2882 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; IMG reference gene:2504107675; PFAM: Glycosyl transferase family 2.
 
  
 0.828
Bcop_1961
ATP-grasp fold domain protein, DUF201-type; COGs: COG0439 Biotin carboxylase; InterPro IPR003806; KEGG: cbk:CLL_A3240 putative carbamoyl-phosphate synthase large chain; PFAM: ATP-grasp fold, DUF201-type; SPTR: Putative carbamoyl-phosphate synthase; IMG reference gene:2504107677; PFAM: D-ala D-ala ligase C-terminus; overlaps another CDS with the same product name.
 
    0.809
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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