STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1968KEGG: bfs:BF1214 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107684; PFAM: Protein of unknown function (DUF2874). (145 aa)    
Predicted Functional Partners:
Bcop_2042
KEGG: bfs:BF3067 putative lipoprotein; SPTR: Putative lipoprotein; IMG reference gene:2504107761.
  
     0.756
Bcop_2041
TonB-dependent receptor plug; InterPro IPR012910; KEGG: bfr:BF3229 putative outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504107760; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.751
Bcop_2043
KEGG: bfs:BF3066 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107762.
  
     0.733
Bcop_2225
Protein of unknown function DUF306 Meta and HslJ; COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: bfs:BF1184 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: Putative uncharacterized protein; IMG reference gene:2504107946; PFAM: META domain.
  
 
   0.574
Bcop_1491
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: fjo:Fjoh_3050 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Sensor sensor histidine kinase; IMG reference gene:2504107202; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
    0.559
Bcop_2011
KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730.
  
     0.497
Bcop_1744
KEGG: bth:BT_1490 putative surface protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107460.
  
     0.493
Bcop_1286
KEGG: bfs:BF1248 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106992.
  
     0.490
Bcop_1256
COGs: COG3247 conserved hypothetical protein; KEGG: bth:BT_1330 hypothetical protein; SPTR: Uncharacterized conserved protein; IMG reference gene:2504106962.
  
     0.477
Bcop_2143
KEGG: bfs:BF1248 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107864.
  
     0.467
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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