STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1977COGs: COG3775 Phosphotransferase system galactitol-specific IIC component; InterPro IPR004703; KEGG: bvu:BVU_1796 putative phosphotransferase enzyme II, C component; PFAM: Phosphotransferase system, sugar-specific permease component; SPTR: Putative phosphotransferase enzyme II, C component; IMG reference gene:2504107693; PFAM: PTS system sugar-specific permease component. (453 aa)    
Predicted Functional Partners:
Bcop_1979
Gluconate 5-dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpy:Cphy_2534 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Gluconate 5-dehydrogenase; SPTR: Gluconate 5-dehydrogenase; IMG reference gene:2504107695; PFAM: short chain dehydrogenase.
  
 
  0.923
Bcop_1978
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: pdi:BDI_3185 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; PFAM: KDPG/KHG aldolase; SPTR: Putative uncharacterized protein; TIGRFAM: KDPG/KHG aldolase; IMG reference gene:2504107694; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase.
 
    0.850
kduI-2
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
    0.804
Bcop_2345
3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cth:Cthe_0934 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; IMG reference gene:2504108076; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
  0.730
Bcop_1980
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: pdi:BDI_3186 putative gluconate kinase; PFAM: Carbohydrate/purine kinase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107696; PFAM: pfkB family carbohydrate kinase.
  
    0.670
Bcop_1989
N-acetylglucosamine-6-sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bth:BT_4656 N-acetylglucosamine-6-sulfatase precursor; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase; IMG reference gene:2504107705; PFAM: Sulfatase.
  
    0.536
Bcop_1990
Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: phe:Phep_2825 sulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase A and related enzymes; IMG reference gene:2504107706; PFAM: Sulfatase.
  
    0.535
Bcop_0155
Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: dfe:Dfer_2520 sulfatase; PFAM: Sulfatase; SPTR: Putative uncharacterized protein; IMG reference gene:2504105811; PFAM: Sulfatase.
   
    0.479
Bcop_0291
Beta-mannosidase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; KEGG: bfr:BF1733 beta-mannosidase; PRIAM: Beta-mannosidase; SPTR: Beta-mannosidase; IMG reference gene:2504105952; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
   
    0.478
Bcop_0614
N-acetylglucosamine-6-sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pdi:BDI_3921 mucin-desulfating sulfatase MdsA; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106292; PFAM: Sulfatase.
   
    0.478
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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