Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Bcop_1985Glycosyl hydrolase family 88; InterPro IPR010905; KEGG: bth:BT_4658 glucuronyl hydrolase; PFAM: Glycosyl hydrolase, family 88; SPTR: Highly conserved protein containing a thioredoxin domain; IMG reference gene:2504107701; PFAM: Glycosyl Hydrolase Family 88. (425 aa)    
Predicted Functional Partners:
Bcop_0446
KEGG: bvu:BVU_1105 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106110.
 
     0.759
kduI-2
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.675
Bcop_1986
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR001789:IPR018060:IPR 011110:IPR011123:IPR000005; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, sub [...]
 
   
 0.650
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.604
Bcop_1979
Gluconate 5-dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpy:Cphy_2534 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Gluconate 5-dehydrogenase; SPTR: Gluconate 5-dehydrogenase; IMG reference gene:2504107695; PFAM: short chain dehydrogenase.
 
   
 0.582
Bcop_1984
InterPro IPR012480; KEGG: bth:BT_4657 heparinase III protein; PFAM: Heparinase II/III-like; SPTR: Heparinase III protein; IMG reference gene:2504107700; PFAM: Heparinase II/III-like protein.
  
  
 0.569
Bcop_1983
Heparinase II/III family protein; InterPro IPR012480; KEGG: phe:Phep_2833 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504107699; PFAM: Heparinase II/III-like protein.
  
  
 0.531
Bcop_1384
KEGG: lby:Lbys_2826 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107093.
 
  
 0.474
Bcop_1982
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; IMG reference gene:2504107698; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
 
     0.446
Bcop_1974
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bfs:BF0662 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; IMG reference gene:2504107690; PFAM: SusD family.
  
     0.427
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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