STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_1989N-acetylglucosamine-6-sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bth:BT_4656 N-acetylglucosamine-6-sulfatase precursor; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase; IMG reference gene:2504107705; PFAM: Sulfatase. (520 aa)    
Predicted Functional Partners:
Bcop_1990
Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: phe:Phep_2825 sulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase A and related enzymes; IMG reference gene:2504107706; PFAM: Sulfatase.
 
    
0.787
Bcop_2212
Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: bth:BT_0238 anaerobic sulfatase-maturase; PFAM: Radical SAM; SPTR: Putative uncharacterized protein; IMG reference gene:2504107933; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic sulfatase-maturating enzyme; radical SAM additional 4Fe4S-binding domain.
 
   0.747
Bcop_1988
KEGG: bth:BT_4655 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107704.
 
     0.740
Bcop_1991
InterPro IPR012480; KEGG: bth:BT_4657 heparinase III protein; PFAM: Heparinase II/III-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504107707; PFAM: Heparinase II/III-like protein.
       0.708
Bcop_1987
Glucokinase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bth:BT_4654 ROK family transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR: Glucokinase; IMG reference gene:2504107703; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase).
  
    0.656
Bcop_0821
COGs: COG4409 Neuraminidase (sialidase); KEGG: bfs:BF4051 putative neuraminidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106510; PFAM: BNR/Asp-box repeat.
  
  0.624
Bcop_1979
Gluconate 5-dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpy:Cphy_2534 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Gluconate 5-dehydrogenase; SPTR: Gluconate 5-dehydrogenase; IMG reference gene:2504107695; PFAM: short chain dehydrogenase.
  
 
 0.575
Bcop_1977
COGs: COG3775 Phosphotransferase system galactitol-specific IIC component; InterPro IPR004703; KEGG: bvu:BVU_1796 putative phosphotransferase enzyme II, C component; PFAM: Phosphotransferase system, sugar-specific permease component; SPTR: Putative phosphotransferase enzyme II, C component; IMG reference gene:2504107693; PFAM: PTS system sugar-specific permease component.
  
    0.536
Bcop_2345
3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cth:Cthe_0934 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; IMG reference gene:2504108076; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.521
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.439
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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