STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Bcop_1997Xenobiotic-transporting ATPase; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: pdi:BDI_3664 ABC transporter ATP-binding protein; PFAM: Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504107713; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family. (737 aa)    
Predicted Functional Partners:
Bcop_0159
Biotin/lipoyl attachment domain-containing protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: bfs:BF3760 hypothetical protein; PFAM: Biotin/lipoyl attachment; SPTR: Putative uncharacterized protein; IMG reference gene:2504105815; PFAM: HlyD family secretion protein.
  
 0.930
Bcop_0307
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: bfs:BF0188 putative transport ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; IMG reference gene:2504105968; PFAM: ABC transporter transmembrane region; ABC transporter.
 
 
 
0.807
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
0.785
Bcop_0792
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: fjo:Fjoh_2404 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, membrane protein; IMG reference gene:2504106480; PFAM: ABC transporter transmembrane region; ABC transporter.
   
  0.779
Bcop_1342
KEGG: bvu:BVU_1378 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107051.
 
  
 0.690
Bcop_1998
KEGG: sli:Slin_3643 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107714.
 
    0.669
Bcop_1723
Phosphonate-transporting ATPase; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: bth:BT_0694 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; IMG reference gene:2504107439; PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group.
 
     0.548
Bcop_1451
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_4695 outer membrane efflux protein precursor; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504107162; PFAM: Outer membrane efflux protein.
 
 
 0.487
Bcop_1808
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_1811 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504107524; PFAM: Outer membrane efflux protein.
 
 
 0.476
Bcop_0126
Cl- channel voltage-gated family protein; COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644; KEGG: bfs:BF3674 putative transport related, membrane protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SPTR: Putative chloride channel protein; IMG reference gene:2504105782; PFAM: CBS domain; Voltage gated chloride channel.
    
  0.457
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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