Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_1998KEGG: sli:Slin_3643 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107714. (269 aa)    
Predicted Functional Partners:
Bcop_1281
KEGG: pmz:HMPREF0659_A6007 putative lipoprotein; SPTR: Putative lipoprotein; IMG reference gene:2504106987.
  
     0.739
Bcop_1997
Xenobiotic-transporting ATPase; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: pdi:BDI_3664 ABC transporter ATP-binding protein; PFAM: Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504107713; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family.
 
    0.669
Bcop_1999
Transposase; KEGG: dfe:Dfer_4025 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504107715; PFAM: Transposase.
       0.406
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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