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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2001Hypothetical protein; KEGG: cla:Cla_0809 cytochrome c biogenesis protein; SPTR: Cytochrome c biogenesis protein; IMG reference gene:2504107718; PFAM: Phosphatidylinositolglycan class N (PIG-N). (130 aa)    
Predicted Functional Partners:
Bcop_2002
KEGG: nam:NAMH_0752 hypothetical protein; SPTR: Sensory box histidine kinase; IMG reference gene:2504107719.
       0.483
Bcop_2000
Hypothetical protein; KEGG: stp:Strop_2172 EmrB/QacA family drug resistance transporter; SPTR: Putative uncharacterized protein; IMG reference gene:2504107717.
       0.420
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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