STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2005AbgT transporter; COGs: COG2978 Putative p-aminobenzoyl-glutamate transporter; InterPro IPR004697; KEGG: bfr:BF2234 putative efflux pump component protein; PFAM: AbgT putative transporter; SPTR: Putative uncharacterized protein; IMG reference gene:2504107724; PFAM: AbgT putative transporter family; TIGRFAM: p-Aminobenzoyl-glutamate transporter family. (485 aa)    
Predicted Functional Partners:
Bcop_2006
COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: bfs:BF2282 putative two component system response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Probable two-component system response regulator; IMG reference gene:2504107725; PFAM: Response regulator receiver domain.
       0.821
Bcop_2007
Histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR019734:IPR003594; KEGG: bfs:BF2281 putative two component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107726; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.814
Bcop_2008
Ribose-phosphate pyrophosphokinase; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000836; KEGG: bth:BT_0748 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; IMG reference gene:2504107727; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase.
       0.513
Bcop_0885
COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: bth:BT_1270 putative Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Putative Na+/H+ antiporter; IMG reference gene:2504106580; PFAM: Na+/H+ antiporter family.
 
     0.435
Bcop_0293
C4-dicarboxylate anaerobic carrier; COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: bfs:BF1046 putative C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: Short-chain fatty acids transporter; IMG reference gene:2504105954; PFAM: C4-dicarboxylate anaerobic carrier.
  
     0.404
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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