Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_2009TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2506 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504107728; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (679 aa)    
Predicted Functional Partners:
Bcop_2010
KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504107729.
 
   0.959
Bcop_2011
KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730.
 
    0.927
Bcop_1745
KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107461.
 
   0.847
Bcop_2013
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107732.
 
   0.803
Bcop_1744
KEGG: bth:BT_1490 putative surface protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107460.
 
    0.800
Bcop_1743
KEGG: bfs:BF1581 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107459.
 
    0.771
Bcop_2012
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107731.
  
   0.757
Bcop_1955
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bfr:BF2139 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; IMG reference gene:2504107671; PFAM: SusD family.
  
 
   0.557
Bcop_1808
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_1811 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504107524; PFAM: Outer membrane efflux protein.
  
     0.553
Bcop_1956
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: bfs:BF2195 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative exported protein; IMG reference gene:2504107672; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.507
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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