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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2011KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730. (579 aa)    
Predicted Functional Partners:
Bcop_2013
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107732.
 
    0.946
Bcop_2010
KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504107729.
    0.936
Bcop_2009
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2506 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504107728; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
    0.926
Bcop_2012
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107731.
  
    0.820
Bcop_1752
InterPro IPR019271; KEGG: bfr:BF3025 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: Putative uncharacterized protein; IMG reference gene:2504107468; PFAM: Predicted metal-binding protein (DUF2284).
 
   
 0.797
Bcop_1745
KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107461.
    0.777
Bcop_1746
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2506 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative outer membrane receptor for transport of vitamin B; IMG reference gene:2504107462; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
    0.757
Bcop_0859
KEGG: bfr:BF3574 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106549; PFAM: Histone H1-like protein Hc1.
  
     0.629
Bcop_1743
KEGG: bfs:BF1581 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107459.
 
  
 0.624
Bcop_0983
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: bfs:BF2639 lipoprotein; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; IMG reference gene:2504106684; TIGRFAM: outer membrane assembly lipoprotein YfiO.
   
 
 0.582
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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