STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2012Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107731. (707 aa)    
Predicted Functional Partners:
Bcop_2011
KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730.
  
    0.814
Bcop_2013
Hypothetical protein; KEGG: bfr:BF3031 putative cell wall biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107732.
      
0.773
Bcop_2009
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2506 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504107728; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
   0.757
Bcop_2010
KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: Putative lipoprotein; IMG reference gene:2504107729.
   
   0.735
Bcop_0028
Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: bfr:BF1033 FtsK/SpoIIIE family cell division protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; SPTR: Putative uncharacterized protein; IMG reference gene:2504105683; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
    
   0.479
Bcop_0747
KEGG: bfs:BF0908 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2504106435; PFAM: AsmA family.
    
  0.406
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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