STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2020Acriflavin resistance protein; COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: bfs:BF3368 putative copper/silver resistance-related transport membrane protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system transmembrane protein; IMG reference gene:2504107739; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1282 aa)    
Predicted Functional Partners:
Bcop_2022
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR006121; KEGG: bfs:BF3365 putative metal transport-related, exported protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107741; PFAM: Heavy-metal-associated domain; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.971
Bcop_2021
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pdi:BDI_1785 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504107740; PFAM: Outer membrane efflux protein.
 
 
  0.962
Bcop_1807
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_4294 RND family efflux transporter MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107523; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.813
Bcop_0184
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR000089; KEGG: fbc:FB2170_10626 cation efflux system protein; PFAM: Biotin/lipoyl attachment; SPTR: Possible membrane-fusion protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504105841; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.764
Bcop_1449
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bth:BT_4693 cation efflux system protein; PFAM: Secretion protein HlyD; SPTR: Cation efflux system protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107160; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.745
Bcop_0185
COGs: COG1538 Outer membrane protein; KEGG: fbc:FB2170_10631 putative transport-related membrane protein; SPTR: Cation efflux protein; IMG reference gene:2504105842; PFAM: Outer membrane efflux protein.
 
  0.671
Bcop_2019
KEGG: lbc:LACBIDRAFT_300846 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2504107738.
       0.483
Bcop_0059
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR000089; KEGG: bfr:BF3721 cation efflux system protein; PFAM: Biotin/lipoyl attachment; SPTR: Cation efflux system protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504105714; PFAM: Biotin-requiring enzyme; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.455
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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