STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2033TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: pru:PRU_0154 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein; IMG reference gene:2504107752; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family. (1086 aa)    
Predicted Functional Partners:
Bcop_2034
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: pru:PRU_1889 hypothetical protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; IMG reference gene:2504107753; PFAM: SusD family.
 
     0.942
Bcop_1266
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: pru:PRU_2713 putative lipoprotein; PFAM: RagB/SusD; SPTR: Putative lipoprotein; IMG reference gene:2504106972; PFAM: SusD family.
  
 
   0.910
Bcop_0654
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1853 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative outer membrane protein, probably involved in nutrient binding; IMG reference gene:2504106334; PFAM: SusD family.
 
     0.836
Bcop_1981
InterPro IPR012944; KEGG: phe:Phep_2828 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504107697; PFAM: SusD family.
  
 
   0.800
Bcop_2055
InterPro IPR012944; KEGG: phe:Phep_2529 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504107774; PFAM: SusD family.
 
 
   0.791
Bcop_1829
InterPro IPR012944; KEGG: dfe:Dfer_5600 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; IMG reference gene:2504107545; PFAM: SusD family.
  
 
   0.790
Bcop_0770
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1368 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein; IMG reference gene:2504106458; PFAM: SusD family.
  
 
   0.788
Bcop_1322
InterPro IPR012944; KEGG: dfe:Dfer_5600 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504107030; PFAM: SusD family.
  
 
   0.783
Bcop_0656
KEGG: bvu:BVU_1855 hypothetical protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; IMG reference gene:2504106336; PFAM: SusD family.
 
     0.741
Bcop_1341
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bvu:BVU_1379 hypothetical protein; PFAM: RagB/SusD; SPTR: Putative outer membrane protein, probably involved in nutrient binding; IMG reference gene:2504107050; PFAM: SusD family.
 
   
 0.694
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.