STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2054KEGG: bth:BT_2966 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107773. (502 aa)    
Predicted Functional Partners:
Bcop_2053
Endonuclease/exonuclease/phosphatase; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: phe:Phep_2528 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Secreted protein; IMG reference gene:2504107772; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.608
Bcop_2055
InterPro IPR012944; KEGG: phe:Phep_2529 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504107774; PFAM: SusD family.
       0.603
Bcop_2056
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: phe:Phep_2530 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal; SPTR: TonB-linked outer membrane receptor protein; IMG reference gene:2504107775; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-l [...]
       0.603
Bcop_2052
Alpha-N-acetylglucosaminidase; InterPro IPR007781; KEGG: amu:Amuc_0060 alpha-N-acetylglucosaminidase; PFAM: Alpha-N-acetylglucosaminidase; PRIAM: Alpha-N-acetylglucosaminidase; SPTR: Alpha-N-acetylglucosaminidase (NAGLU); IMG reference gene:2504107771; PFAM: Alpha-N-acetylglucosaminidase (NAGLU).
       0.499
Bcop_2057
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_2324 putative anti-sigma factor; PFAM: FecR protein; SPTR: Putative anti-sigma factor; IMG reference gene:2504107776; PFAM: FecR protein.
       0.430
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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