STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2104KEGG: fjo:Fjoh_3688 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107825. (382 aa)    
Predicted Functional Partners:
Bcop_2105
Protein of unknown function DUF87; COGs: COG0433 ATPase; InterPro IPR002789; KEGG: fjo:Fjoh_3687 hypothetical protein; PFAM: Domain of unknown function DUF87; SPTR: Putative uncharacterized protein; IMG reference gene:2504107826; PFAM: Domain of unknown function DUF87.
       0.788
Bcop_2103
ATP-binding region ATPase domain protein; COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594; KEGG: rpa:RPA0369 aminoacyl-tRNA synthetase, class I:ATP-binding region, ATPase-like; PFAM: ATPase-like, ATP-binding domain; SPTR: Aminoacyl-tRNA synthetase, class I:ATP-binding region, ATPase-like; IMG reference gene:2504107824; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.576
Bcop_2106
Hypothetical protein; KEGG: pfh:PFHG_01119 conserved hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107827.
       0.513
Bcop_2107
KEGG: sun:SUN_1609 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107828.
       0.513
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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