STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2116InterPro IPR022187; KEGG: bfs:BF1235 hypothetical protein; SPTR: Conjugative transposon TraM protein; TIGRFAM: Conjugative transposon, TraM; IMG reference gene:2504107837; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein. (440 aa)    
Predicted Functional Partners:
Bcop_2111
Bacteroides conjugation system ATPase, TraG family; COGs: COG3451 Type IV secretory pathway VirB4 protein; InterPro IPR022509; KEGG: bth:BT_0093 conjugate transposon protein; SPTR: Conserved protein found in conjugate transposon; TIGRFAM: Conjugation system ATPase, TraG; IMG reference gene:2504107832; PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family.
 
   
 0.958
Bcop_2114
InterPro IPR022276; KEGG: bfs:BF1237 hypothetical protein; SPTR: Conjugative transposon TraK protein; TIGRFAM: Conjugative transposon, TraK; IMG reference gene:2504107835; TIGRFAM: Bacteroides conjugative transposon TraK protein.
   
 0.958
Bcop_2117
Bacteroides conjugative transposon TraN protein; InterPro IPR022298; KEGG: bfs:BF1234 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conjugative transposon, TraN; IMG reference gene:2504107838; TIGRFAM: Bacteroides conjugative transposon TraN protein.
 
   
 0.957
Bcop_2118
Conjugative transposon protein TraO; InterPro IPR018899; KEGG: bfs:BF1233 hypothetical protein; PFAM: Conjugative transposon, TraO; SPTR: Putative uncharacterized protein; IMG reference gene:2504107839; PFAM: Conjugative transposon protein TraO.
 
  
 0.952
Bcop_2112
KEGG: bfs:BF1239 hypothetical protein; SPTR: TraI; IMG reference gene:2504107833.
 
   
 0.949
Bcop_2113
InterPro IPR022393:IPR012424; KEGG: bfr:BF1355 conjugate transposon protein; PFAM: Conjugative transposon, TraJ, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Conjugative transposon, TraJ; IMG reference gene:2504107834; PFAM: homologs of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein.
   
 0.949
Bcop_2119
KEGG: bth:BT_0084 conjugate transposon protein; SPTR: Conserved protein found in conjugate transposon; IMG reference gene:2504107840.
 
   
 0.947
Bcop_2110
KEGG: bfs:BF1242 putative transmembrane conjugate transposon protein; SPTR: Conserved hypothetical transmembrane protein found on conjugate transposon; IMG reference gene:2504107831.
 
     0.941
Bcop_2109
KEGG: bfs:BF1243 putative transmembrane conjugate transposon protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107830.
 
   
 0.917
Bcop_2121
KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107842.
 
     0.806
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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