Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bcop_2124Protein of unknown function DUF1738; COGs: COG4227 Antirestriction protein; InterPro IPR013610; KEGG: bfs:pBF9343.02 hypothetical protein; PFAM: Domain of unknown function DUF1738; SPTR: PBF9343 plasmid; IMG reference gene:2504107845; PFAM: Domain of unknown function (DUF1738). (329 aa)    
Predicted Functional Partners:
Bcop_0980
InterPro IPR001440; KEGG: bfs:BF2852 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106681.
  
     0.484
Bcop_1666
KEGG: bth:BT_3742 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107382.
  
     0.428
Bcop_0214
Regulatory protein TetR; InterPro IPR001647; KEGG: bfs:BF3965 putative TetR transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative TetR transcriptional regulator; IMG reference gene:2504105873; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.422
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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