Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_2149KEGG: bth:BT_2998 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107870. (131 aa)    
Predicted Functional Partners:
Bcop_2150
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: bvu:BVU_3426 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; IMG reference gene:2504107871; PFAM: Helix-turn-helix.
       0.526
Bcop_2151
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: bvu:BVU_3427 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Putative uncharacterized protein; IMG reference gene:2504107872; PFAM: HNH endonuclease.
       0.526
Bcop_2148
COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: lby:Lbys_0808 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; IMG reference gene:2504107869; PFAM: ABC transporter.
       0.450
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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