STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2152Hypothetical protein; InterPro IPR011579; KEGG: lic:LIC12051 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107873. (1245 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.763
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.665
Bcop_1061
Protein of unknown function DUF1735; InterPro IPR006558:IPR013728; KEGG: pmz:HMPREF0659_A6287 putative lipoprotein; PFAM: Domain of unknown function DUF1735; SMART: LamG-like jellyroll fold; SPTR: Putative uncharacterized protein; IMG reference gene:2504106763; PFAM: Domain of unknown function (DUF1735); Pentaxin family.
  
    0.573
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
  
 0.539
cobB
COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; InterPro IPR003000; KEGG: bth:BT_2975 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase (Regulatory protein SIR2-like protein); IMG reference gene:2504106125; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.523
Bcop_1060
InterPro IPR013728:IPR001223; KEGG: pmz:HMPREF0659_A6286 endo-beta-N-acetylglucosaminidase F1 domain protein; PFAM: Glycoside hydrolase, family 18, catalytic domain; Domain of unknown function DUF1735; PRIAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106762; PFAM: Domain of unknown function (DUF1735); Glycosyl hydrolases family 18.
  
     0.503
Bcop_0907
UPF0301 protein yqgE; COGs: COG1678 Putative transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: bfs:BF2109 putative transcriptional regulator; PFAM: Protein of unknown function DUF179; SPTR: Putative transcriptional regulator; IMG reference gene:2504106602; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.
   
    0.479
Bcop_2150
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: bvu:BVU_3426 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; IMG reference gene:2504107871; PFAM: Helix-turn-helix.
       0.413
Bcop_2151
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: bvu:BVU_3427 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Putative uncharacterized protein; IMG reference gene:2504107872; PFAM: HNH endonuclease.
       0.413
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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