STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2174Helix-turn-helix domain protein; InterPro IPR001387; KEGG: bvu:BVU_3759 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Toxin-antitoxin system, antitoxin component, Xre family; IMG reference gene:2504107895; PFAM: Helix-turn-helix. (96 aa)    
Predicted Functional Partners:
Bcop_2173
HipA domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: pru:PRU_0523 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504107894; PFAM: HipA-like N-terminal domain; HipA-like C-terminal domain.
  
 
 0.914
Bcop_1233
Competence/damage-inducible protein CinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135:IPR020817:IPR008136:IPR001453; KEGG: bfs:BF2511 putative competence-damage inducible; PFAM: CinA, C-terminal; Molybdopterin binding; SMART: Molybdopterin binding; SPTR: CinA-like protein; TIGRFAM: Competence-induced protein CinA; Molybdenum cofactor synthesis; CinA, C-terminal; IMG reference gene:2504106937; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-ter [...]
    
 0.691
Bcop_0817
NAD+ synthetase; COGs: COG0171 NAD synthase; InterPro IPR003010:IPR022310:IPR003694; KEGG: bth:BT_0205 NAD synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: Putative uncharacterized protein; TIGRFAM: NAD synthase; IMG reference gene:2504106506; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase.
    
 0.573
Bcop_2386
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895:IPR002880:IPR019752:IPR019456:IPR 001450:IPR011766; KEGG: bth:BT_1747 pyruvate-flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; SPTR: Pyru [...]
    
 0.538
Bcop_1932
HipA domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_3974 protein containing HipA-like C-terminal domain; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Protein containing hipA-like C-terminal domain; IMG reference gene:2504107648; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain.
  
 
 0.490
Bcop_1842
HipA domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: pgi:PG0859 hypothetical protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504107558; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain.
   
 
 0.471
Bcop_1843
HipA N-terminal domain protein; InterPro IPR017508; KEGG: pgi:PG0858 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: HipA, N-terminal; IMG reference gene:2504107559; TIGRFAM: HipA N-terminal domain.
   
 
 0.471
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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