STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2182InterPro IPR001440:IPR019734; KEGG: bfs:BF1658 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107903; PFAM: Tetratricopeptide repeat. (93 aa)    
Predicted Functional Partners:
Bcop_2183
InterPro IPR001450; KEGG: bfs:BF1657 putative ferredoxin; PFAM: 4Fe-4S binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107904; PFAM: 4Fe-4S binding domain.
       0.830
Bcop_2184
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: bfs:BF1656 2-ketoisovalerate ferredoxin reductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); SPTR: 2-oxoglutarate oxidoreductase, alpha subunit; IMG reference gene:2504107905; PFAM: domain.
       0.820
Bcop_2185
KEGG: bfs:BF1655 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107906.
       0.763
Bcop_2186
2-oxoglutarate synthase; COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: bfs:BF1653 putative 2-oxoglutarate synthase subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: Ketoisovalerate oxidoreductase subunit VorA; IMG reference gene:2504107907; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
       0.749
Bcop_2187
COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: bfs:BF1652A putative 2-oxoglutarate synthase subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoglutarate oxidoreductase, gamma subunit; IMG reference gene:2504107908; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.
       0.746
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.708
Bcop_2181
Sugar-phosphate isomerase, RpiB/LacA/LacB family; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: bfs:BF1659 putative ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Putative ribose 5-phosphate isomerase; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; IMG reference gene:2504107902; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family.
       0.586
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
       0.560
Bcop_2189
Extracellular solute-binding protein family 3; COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638; KEGG: bvu:BVU_2308 glutamine ABC transporter, periplasmic glutamine-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Putative uncharacterized protein; IMG reference gene:2504107910; PFAM: Bacterial extracellular solute-binding proteins, family 3.
       0.559
Bcop_2190
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: bth:BT_0322 putative oxidoreductase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504107911; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
       0.542
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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