STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2192KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX). (532 aa)    
Predicted Functional Partners:
Bcop_1033
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106735.
 
 
   0.874
Bcop_1408
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: bfs:BF2374 putative surface membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative surface membrane protein; IMG reference gene:2504107117; PFAM: Surface antigen.
  
 
 
 0.870
Bcop_0983
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: bfs:BF2639 lipoprotein; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; IMG reference gene:2504106684; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
 
 
 0.828
Bcop_2193
KEGG: bth:BT_0315 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2504107914.
 
    0.828
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
  
     0.770
Bcop_1231
Protein of unknown function DUF490; InterPro IPR007452; KEGG: bth:BT_0921 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Putative uncharacterized protein; IMG reference gene:2504106935; PFAM: Family of unknown function (DUF490).
  
     0.743
Bcop_2408
KEGG: bth:BT_4367 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2504108140; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.740
Bcop_0713
Protein of unknown function DUF1573; InterPro IPR011467; KEGG: bfs:BF0717 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; IMG reference gene:2504106395; PFAM: Protein of unknown function (DUF1573).
  
     0.733
Bcop_0267
KEGG: bth:BT_3446 cell division protein FtsQ; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105926.
  
     0.726
Bcop_0697
KEGG: bth:BT_4000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106378.
  
     0.722
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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