STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2198Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: bfs:BF2946 putative aminoglycoside efflux pump; PFAM: Acriflavin resistance protein; SPTR: Putative uncharacterized protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; IMG reference gene:2504107919; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1033 aa)    
Predicted Functional Partners:
Bcop_2197
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: bfs:BF2945 putative puter membrane protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein oprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; IMG reference gene:2504107918; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  0.997
Bcop_2199
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfr:BF3110 acriflavine resistance protein A; PFAM: Secretion protein HlyD; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107920; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  0.997
Bcop_1141
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cts:Ctha_1680 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504106844; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  0.985
Bcop_1139
COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: cts:Ctha_1678 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; IMG reference gene:2504106842; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  0.955
Bcop_2261
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfs:BF0506 putative outer membrane transport/efflux protein; PFAM: Outer membrane efflux protein; SPTR: Putative outer membrane transport/efflux protein; IMG reference gene:2504107982; PFAM: Outer membrane efflux protein.
  
  0.937
Bcop_0213
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfs:BF3964 putative outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Putative outer membrane efflux protein; IMG reference gene:2504105872; PFAM: Outer membrane efflux protein.
 
  0.917
Bcop_0211
Acriflavin resistance protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bfs:BF3962 putative transmembrane Acr-type transport protein; PFAM: Acriflavin resistance protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105870; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 
0.903
Bcop_1189
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF3193 putative lipoprotein; PFAM: Secretion protein HlyD; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504106892; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.826
Bcop_1698
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pdi:BDI_0706 component of multidrug efflux system; SPTR: Putative uncharacterized protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504107414; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.759
Bcop_0212
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bth:BT_2687 cation efflux system protein; PFAM: Secretion protein HlyD; SPTR: Cation efflux system protein; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504105871; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  0.752
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.