STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bcop_22192-alkenal reductase; COGs: COG2130 Putative NADP-dependent oxidoreductase; InterPro IPR013149:IPR020843; KEGG: sli:Slin_3139 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; PRIAM: 2-alkenal reductase; SMART: Polyketide synthase, enoylreductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; IMG reference gene:2504107940; PFAM: Zinc-binding dehydrogenase. (330 aa)    
Predicted Functional Partners:
nfo
Endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
  
    0.768
Bcop_0611
COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: aps:CFPG_348 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; IMG reference gene:2504106288; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase.
    
   0.485
Bcop_0013
COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: bfs:BF3437 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504105668; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/P [...]
   
   0.448
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.432
Bcop_2216
TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; KEGG: bfs:BF1194 putative K+/Na+ uptake protein; PFAM: Regulator of K+ conductance, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504107937; PFAM: TrkA-N domain.
       0.432
Bcop_2217
H(+)-transporting two-sector ATPase; COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: bth:BT_4665 K+ uptake protein; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107938; PFAM: Cation transport protein.
       0.432
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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