STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2227Peroxiredoxin; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: bth:BT_4611 putative bacterioferritin co-migratory protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; PRIAM: Peroxiredoxin; SPTR: Bacterioferritin comigratory protein; IMG reference gene:2504107948; PFAM: AhpC/TSA family. (151 aa)    
Predicted Functional Partners:
Bcop_2226
COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: bfs:BF1182 hypothetical protein; PFAM: Saccharopine dehydrogenase / Homospermidine synthase; SPTR: Putative uncharacterized protein; IMG reference gene:2504107947; PFAM: Saccharopine dehydrogenase.
  
    0.851
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.851
Bcop_0680
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.549
Bcop_0836
KEGG: bth:BT_0249 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase; SPTR: 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase; IMG reference gene:2504106525.
    
  0.549
Bcop_2225
Protein of unknown function DUF306 Meta and HslJ; COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: bfs:BF1184 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: Putative uncharacterized protein; IMG reference gene:2504107946; PFAM: META domain.
       0.418
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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