STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2287Protein of unknown function DUF1212; COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: amu:Amuc_1962 protein of unknown function DUF1212; PFAM: Protein of unknown function DUF1212; SPTR: Putative uncharacterized protein; IMG reference gene:2504108012; PFAM: Protein of unknown function (DUF1212). (262 aa)    
Predicted Functional Partners:
Bcop_2288
COGs: COG3610 conserved hypothetical protein; KEGG: asu:Asuc_0715 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108013.
 
  
 0.950
Bcop_1196
KEGG: bfs:BF2536 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106899.
 
  
 0.806
Bcop_2289
KEGG: mfa:Mfla_0012 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108014.
       0.501
Bcop_2286
Hypothetical protein; KEGG: bfs:BF1060 putative dehydrogenase/oxidoreductase; SPTR: Putative uncharacterized protein; IMG reference gene:2504108011.
       0.468
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.