STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2295COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF3029 putative TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504108020; PFAM: TonB-dependent Receptor Plug Domain. (669 aa)    
Predicted Functional Partners:
Bcop_2296
KEGG: chu:CHU_1609 surface layer protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108021.
 
     0.888
Bcop_2294
InterPro IPR000601; KEGG: fjo:Fjoh_1410 PKD domain-containing protein; PFAM: PKD domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504108019.
  
    0.746
Bcop_2444
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
   0.631
Bcop_1434
TonB family protein; InterPro IPR006260; KEGG: sli:Slin_4418 TonB family protein; SPTR: Putative TonB protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504107145; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
   0.587
Bcop_2011
KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730.
 
    0.533
Bcop_0076
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
   0.530
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
   0.496
Bcop_1448
Cyclic nucleotide-binding protein; InterPro IPR000595; KEGG: bth:BT_1389 hypothetical protein; PFAM: Cyclic nucleotide-binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107159; PFAM: Cyclic nucleotide-binding domain.
  
     0.495
Bcop_1243
KEGG: bth:BT_4405 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106947.
  
 
   0.489
Bcop_1063
KEGG: pmz:HMPREF0659_A6289 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106765.
  
 
   0.481
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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