STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bcop_2341COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bba:Bd0279 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Coronafacic acid synthetase, ligase component; IMG reference gene:2504108072; PFAM: AMP-binding enzyme. (462 aa)    
Predicted Functional Partners:
Bcop_2347
KEGG: pmr:PMI2910 acyl carrier protein; SPTR: Putative acyl carrier protein; IMG reference gene:2504108078.
  
 0.937
Bcop_2345
3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cth:Cthe_0934 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; IMG reference gene:2504108076; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.866
Bcop_2342
Hypothetical protein; KEGG: phe:Phep_2032 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase, CesP; IMG reference gene:2504108073.
  
 
 0.835
Bcop_2344
Beta-ketoacyl synthase; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030; KEGG: fnu:FN0151 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: Beta-ketoacyl synthase, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504108075; PFAM: Beta-ketoacyl synthase, N-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.833
Bcop_2343
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: wbm:Wbm0052 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; IMG reference gene:2504108074; PFAM: FabA-like domain.
     
 0.802
Bcop_2346
Beta-ketoacyl-acyl-carrier-protein synthase II; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR020841; KEGG: lmc:Lm4b_02228 3-oxoacyl-acyl-carrier protein synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SMART: Polyketide synthase, beta-ketoacyl synthase domain; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase / Chain length factor; IMG reference gene:2504108077; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; [...]
  
 
 0.800
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.778
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.777
Bcop_2340
Hypothetical protein; KEGG: pvx:PVX_123795 DNA GyrAse a-subunit; SPTR: DNA GyrAse a-subunit, putative; IMG reference gene:2504108071.
       0.776
Bcop_0862
Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: bfr:BF3093 putative oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; IMG reference gene:2504106552; PFAM: short chain dehydrogenase.
   
 0.749
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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