STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2365YbbR family protein; InterPro IPR012505; KEGG: bth:BT_4593 hypothetical protein; PFAM: YbbR-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504108097; PFAM: YbbR-like protein. (339 aa)    
Predicted Functional Partners:
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.827
Bcop_2366
COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: bth:BT_4592 hypothetical protein; PFAM: Preprotein translocase YajC; SPTR: Putative uncharacterized protein; TIGRFAM: Preprotein translocase YajC; IMG reference gene:2504108098; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit.
       0.793
Bcop_0501
7TM receptor with intracellular metal dependent phosphohydrolase; COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR003607:IPR011621:IPR006674:IPR006675; KEGG: bfs:BF4031 putative transmembrane HD family protein; PFAM: Metal-dependent phosphohydrolase, 7TM intracellular domain; Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Putative membrane-associated HD superfamily hydrolase; TIGRFAM: Uncharacterised protein family HDIG; IMG reference gene:2504106168; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor w [...]
  
  
 0.753
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.719
Bcop_0690
KEGG: bth:BT_3980 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106371.
  
    0.704
Bcop_2363
KEGG: bth:BT_4595 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108095.
 
     0.704
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
  
     0.703
Bcop_2367
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.697
Bcop_2398
KEGG: bfs:BF1000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108130.
  
     0.677
Bcop_0719
KEGG: bfs:BF1004 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106401.
  
     0.653
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.