STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2391GSCFA domain protein; InterPro IPR014982; KEGG: bfs:BF0817 hypothetical protein; PFAM: GSCFA; SPTR: GSCFA family protein; IMG reference gene:2504108123; PFAM: GSCFA family. (333 aa)    
Predicted Functional Partners:
Bcop_2390
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.872
tatA
Sec-independent protein translocase protein tatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.700
tatC
Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
       0.693
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.650
Bcop_2393
TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037; KEGG: bfs:BF0795 potassium transporter peripheral membrane component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: Trk system K+ uptake protein TrkA; IMG reference gene:2504108125; PFAM: TrkA-N domain; TrkA-C domain.
       0.627
Bcop_2394
Cation transporter; COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: bfs:BF0794 putative potassium uptake protein; PFAM: Cation transporter; SPTR: Trk system K+ uptake protein TrkH; IMG reference gene:2504108126; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
       0.627
Bcop_1616
KEGG: pdi:BDI_2883 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107331.
   
 0.559
Bcop_1878
KEGG: abu:Abu_1347 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107594.
   
 0.559
Bcop_1549
Heparinase II/III family protein; InterPro IPR012480; KEGG: bth:BT_4652 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504107264; PFAM: Heparinase II/III-like protein.
   
 0.486
Bcop_1983
Heparinase II/III family protein; InterPro IPR012480; KEGG: phe:Phep_2833 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504107699; PFAM: Heparinase II/III-like protein.
   
 0.486
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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