STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2404KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136. (712 aa)    
Predicted Functional Partners:
Bcop_2399
KEGG: bth:BT_4376 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108131.
 
     0.881
Bcop_2408
KEGG: bth:BT_4367 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2504108140; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
 
     0.880
Bcop_2397
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
  
 0.827
Bcop_0599
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106273.
  
 
 0.806
Bcop_2406
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: bfs:BF0992 hypothetical protein; PFAM: Lipopolysccharide assembly, LptC-related; SPTR: Putative uncharacterized protein; IMG reference gene:2504108138; PFAM: Protein of unknown function (DUF1239).
 
     0.801
Bcop_2402
KEGG: bth:BT_4373 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108134.
 
  
 0.791
Bcop_1408
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: bfs:BF2374 putative surface membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative surface membrane protein; IMG reference gene:2504107117; PFAM: Surface antigen.
  
 
 0.781
Bcop_2192
KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.770
Bcop_0378
KEGG: bth:BT_3342 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106040; PFAM: Protein of unknown function (DUF3108).
 
    0.763
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
 
  
 0.762
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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