STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2424KEGG: bth:BT_4341 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108156. (704 aa)    
Predicted Functional Partners:
Bcop_2419
KEGG: bfs:BF0963 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108151.
 
     0.808
Bcop_0599
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106273.
  
     0.771
Bcop_1033
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106735.
  
     0.768
Bcop_0980
InterPro IPR001440; KEGG: bfs:BF2852 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106681.
  
   
 0.763
Bcop_1405
KEGG: bfs:BF2370 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107114.
  
     0.760
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.758
Bcop_0672
KEGG: bth:BT_2228 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106352.
  
     0.757
Bcop_0740
KEGG: bfs:BF0897 putative transmembrane protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106428.
  
     0.755
Bcop_0968
Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: bfs:BF2635 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM-repeat proteins and domains; IMG reference gene:2504106669; PFAM: LppC putative lipoprotein; LysM domain.
  
     0.750
Bcop_0072
KEGG: bfs:BF3529 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105727.
  
     0.746
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.