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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_2425COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: bfs:BF0955 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504108157; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal. (729 aa)    
Predicted Functional Partners:
Bcop_1037
COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR008333:IPR001433:IPR019480:IPR013027:IPR 006004; KEGG: bfs:BF0926 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase, small subunit; TIGRFAM: Glutamate synthase (NADP [...]
    
 0.940
Bcop_0013
COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: bfs:BF3437 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504105668; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/P [...]
     
 0.892
Bcop_1027
Amidophosphoribosyltransferase; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: bfs:BF2659 putative phosphoribosylpyrophosphate amidotransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106729.
    
  0.883
Bcop_0193
COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR006275:IPR005481:IPR005479:IPR005480:IPR 011607; KEGG: bth:BT_3866 glutamine-dependent carbamyl phosphate synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; PRIAM: Carbamoyl-phosphate synthase (ammonia); SMART: Methylglyoxal synthase-like domain; SPTR: Glutamine-dependent carbamyl phosphate synthetase; TIGRFAM: Carbamoy [...]
     
 0.881
Bcop_2426
Transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: bfs:BF0954 FNR family transcriptional regulator protein; PFAM: Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504108158; PFAM: Cyclic nucleotide-binding domain.
    
 0.757
Bcop_2424
KEGG: bth:BT_4341 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108156.
       0.633
Bcop_2160
COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027; KEGG: hmo:HM1_0999 glutamate synthase (nadph) beta chain, putative; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADPH); SPTR: Putative uncharacterized protein; IMG reference gene:2504107881; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
    
 0.548
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.470
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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