STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH33019.1Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (129 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.803
SEH33091.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.716
SEH33022.1
GTPase, G3E family.
 
   
 0.661
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.656
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.649
SEH42289.1
DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.645
SEH31726.1
Predicted transcriptional regulator, ArsR family.
  
    0.568
SEH40677.1
SWIM zinc finger.
  
    0.568
SEH33020.1
MerC mercury resistance protein.
       0.549
SEH27832.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
  
 0.531
Your Current Organism:
Chryseobacterium culicis
NCBI taxonomy Id: 680127
Other names: C. culicis, CCM 7716, Chryseobacterium culicis Kampfer et al. 2010, Chryseobacterium sp. R4-1A, DSM 23031, LMG 25442, LMG:25442, strain R4-1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.