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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_0041Conserved hypothetical protein; PMID:12618462; match to A. nicotinovorans plasmid not significant but circumstantial evidence - SCAB0051, SCAB0061 also hit same sequence; cluster 0308 with SCAB91031. (173 aa)    
Predicted Functional Partners:
SCAB_0051
Conserved hypothetical protein; PMID:12618462; PMID:12923100; PMID:16547041; cluster 0309 with SCAB91021; SCAB0041 and SCAB0061 also have similarity to A. nicotinovorans plasmid.
       0.649
SCAB_0061
Conserved hypothetical protein; PMID:12618462; cluster 0310 with SCAB91011; SCAB0041 and SCAB0051 also have similarity to A. nicotinovorans plasmid; note codon 5 TTA-Leu BldA target; TTA-Leu codon(s) 5 may indicate regulation by BldA.
       0.649
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.