Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_0071Conserved hypothetical protein; PMID: 6318753; nearest match sequenced as part of S. hygroscopicus hygromycin B biosynthesis cluster; cluster 0311 with SCAB91001. (312 aa)    
Predicted Functional Partners:
SCAB_0081
Putative secreted protein; Cluster 0312 with SCAB90991.
       0.655
SCAB_0091
Conserved hypothetical protein; PMID:16452442; cluster 0313 with SCAB90981.
       0.655
SCAB_0101
Conserved hypothetical protein; PMID:16452442; cluster 0314 with SCAB90971.
       0.655
SCAB_0051
Conserved hypothetical protein; PMID:12618462; PMID:12923100; PMID:16547041; cluster 0309 with SCAB91021; SCAB0041 and SCAB0061 also have similarity to A. nicotinovorans plasmid.
       0.450
SCAB_0061
Conserved hypothetical protein; PMID:12618462; cluster 0310 with SCAB91011; SCAB0041 and SCAB0051 also have similarity to A. nicotinovorans plasmid; note codon 5 TTA-Leu BldA target; TTA-Leu codon(s) 5 may indicate regulation by BldA.
       0.450
CBG71754.1
Conserved hypothetical protein.
  
     0.413
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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