Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_0111Hypothetical protein; Cluster 0315 with SCAB90961; no significant db matches. (125 aa)    
Predicted Functional Partners:
SCAB_0121
Putative DNA-binding protein; Cluster 0316 with SCAB90951.
   
 
 0.824
SCAB_0131
Conserved hypothetical protein; Cluster 0317 with SCAB90941.
       0.623
CBG76027.1
Putative DNA-binding protein; Cluster 0316 with SCAB0121.
   
 
 0.552
CBG69061.1
Putative secreted protein.
   
 
 0.499
CBG71456.1
Putative secreted protein.
   
 
 0.499
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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