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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_0141Putative integrase core domain; PMID:12127493; matches SCAB90931 in TIR. (297 aa)    
Predicted Functional Partners:
SCAB_0151
Putative transposase; PMID:8973350; PMID:9862476; matches SCAB90921 in TIR.
 
  
 0.890
SCAB_0161
Putative IS transposase; PMID:1650732; PMID:16208464; see also SCAB0171, SCAB42801/42811, SCAB44411/SCAB44421, same pattern of apparent overlap; TTA-Leu codon(s) 101 may indicate regulation by BldA.
       0.774
SCAB_0171
Conserved hypothetical protein, IS-associated; PMID:1650732; association with SCAB0161 suggested IS involvement, see also SCAB42801/42811, SCAB44411/SCAB44421.
       0.774
SCAB_0181
Hypothetical protein.
       0.568
CBG70421.1
Putative transposase subunit; PMID: 8973350.
 
  
 0.536
CBG74983.1
Putative transposase; PMID:8973350.
 
  
 0.536
CBG76024.1
Putative transposase; PMID:8973350; PMID:9862476; matches SCAB0151 in TIR.
 
  
 0.536
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.