Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SCAB_0171Conserved hypothetical protein, IS-associated; PMID:1650732; association with SCAB0161 suggested IS involvement, see also SCAB42801/42811, SCAB44411/SCAB44421. (119 aa)    
Predicted Functional Partners:
SCAB_0161
Putative IS transposase; PMID:1650732; PMID:16208464; see also SCAB0171, SCAB42801/42811, SCAB44411/SCAB44421, same pattern of apparent overlap; TTA-Leu codon(s) 101 may indicate regulation by BldA.
 
     0.946
CBG74997.1
Conserved hypothetical protein; TTA-Leu codon(s) 57 may indicate regulation by BldA.
 
     0.774
SCAB_0141
Putative integrase core domain; PMID:12127493; matches SCAB90931 in TIR.
       0.773
SCAB_0151
Putative transposase; PMID:8973350; PMID:9862476; matches SCAB90921 in TIR.
       0.773
CBG71350.1
Putative IS transposase; PMID:16339937; PMID:1650732; see also SCAB42801, SCAB0161/SCAB0171, SCAB44411/SCAB44421, same pattern of apparent overlap; TTA-Leu codon(s) 96 may indicate regulation by BldA.
 
     0.773
CBG71503.1
Putative IS transposase; PMID:1650732; see also SCAB44421, SCAB0161/SCAB0171, SCAB42801/SCAB42811, same pattern of apparent overlap; TTA-Leu codon(s) 96 may indicate regulation by BldA.
 
     0.773
SCAB_0461
Putative IS transposase; PMID:1650732; PMID:16208464; see also SCAB0471.
 
     0.756
CBG71718.1
Conserved hypothetical protein; PMID:16208464.
 
     0.756
SCAB_0181
Hypothetical protein.
       0.568
CBG68727.1
Putative transposase; PMID:12127493; see also SCAB11691, SCAB73571.
  
     0.502
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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