Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_0501Putative secreted oxidoreductase. (342 aa)    
Predicted Functional Partners:
CBG75383.1
Conserved hypothetical protein.
 
  0.971
SCAB_6521
Conserved hypothetical protein.
 
  0.969
CBG75848.1
Conserved hypothetical protein.
 
  0.968
SCAB_0511
Probable short chain dehydrogenase.
 
   0.868
SCAB_0521
Putative racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.843
CBG73952.1
Putative fructokinase.
  
  
 0.825
CBG69448.1
UDP-glucose/GDP-mannose family dehydrogenase (putative secreted protein); PMID:12644223; PMID:12825356; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
   
 
  0.805
scrK
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
     
 0.800
SCAB_0491
Similarity to S. avermitilis hypothetical protein breaks off beyond codon 36.
       0.786
SCAB_0531
Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
  
    0.755
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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