Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lipWPutative hydrolase. (324 aa)    
Predicted Functional Partners:
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
    
   0.790
SCAB_0611
Conserved hypothetical protein.
 
     0.684
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
  
 0.613
CBG70701.1
Conserved hypothetical protein.
  
     0.557
CBG68283.1
Conserved hypothetical protein.
 
     0.484
CBG72853.1
Putative iron-sulfur binding oxidoreductase.
  
   0.442
SCAB_0622
Hypothetical protein; No db matches.
       0.418
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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