close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_0691Putative IS transposase; PMID:1332944; overlaps SCAB0692 seems to be common pattern see also SCAB0371, SCAB0991, SCAB23721, SCAB42901, SCAB90821. (318 aa)    
Predicted Functional Partners:
SCAB_0471
Conserved hypothetical protein, IS-associated; PMID:16208464; PMID:1650732; see SCAB0461; TTA-Leu codon(s) 12 may indicate regulation by BldA.
  
     0.719
CBG71719.1
Conserved hypothetical protein; PMID:16208464; TTA-Leu codon(s) 12 may indicate regulation by BldA.
  
     0.719
SCAB_0461
Putative IS transposase; PMID:1650732; PMID:16208464; see also SCAB0471.
  
     0.472
CBG71718.1
Conserved hypothetical protein; PMID:16208464.
  
     0.472
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.