Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SCAB_0841Putative integrase component; PMID:91141314; see also SCAB1351, SCAB10011, SCAB81301, SCAB90851. (305 aa)    
Predicted Functional Partners:
SCAB_0831
Putative transposase; PMID:8973350; see also SCAB1341, SCAB10021, SCAB81311.
 
  
 0.824
CBG70421.1
Putative transposase subunit; PMID: 8973350.
 
  
 0.526
CBG74983.1
Putative transposase; PMID:8973350.
 
  
 0.526
CBG76024.1
Putative transposase; PMID:8973350; PMID:9862476; matches SCAB0151 in TIR.
 
  
 0.526
SCAB_0151
Putative transposase; PMID:8973350; PMID:9862476; matches SCAB90921 in TIR.
 
  
 0.525
SCAB_0821
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
     
 0.421
SCAB_0811
Putative transposase; PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
       0.409
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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