Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG68220.1Putative cation-transporting ATPase. (763 aa)    
Predicted Functional Partners:
CBG69415.1
Putative metal binding protein.
  
 
 0.771
CBG72901.1
Putative metal-binding protein; B. subtilis copA PMID: 12888353 has architecture like P-type ATPase SCAB58801 plus this CDS; frameshift since divergence of the genera?.
  
 
 0.771
CBG69622.1
Putative sensory histidine kinase.
  
  
 0.515
CBG68217.1
Putative membrane protein.
 
     0.434
CBG68467.1
Putative efflux protein.
 
  
 0.420
CBG68228.1
Putative membrane protein.
 
 
 0.406
CBG68197.1
Conserved hypothetical protein.
 
     0.400
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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