Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBG68274.1 | CBG68275.1 | SCAB_11061 | SCAB_11071 | Conserved hypothetical protein; Belongs to the pirin family. | Conserved hypothetical protein. | 0.781 |
CBG68274.1 | CBG68502.1 | SCAB_11061 | SCAB_13451 | Conserved hypothetical protein; Belongs to the pirin family. | Dimethylarginine dimethylaminohydrolase. | 0.426 |
CBG68274.1 | CBG72323.1 | SCAB_11061 | SCAB_52881 | Conserved hypothetical protein; Belongs to the pirin family. | Putative oxidoreductase; PMID:7883183. | 0.513 |
CBG68274.1 | gatA | SCAB_11061 | SCAB_27221 | Conserved hypothetical protein; Belongs to the pirin family. | Putative glutamyl tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.414 |
CBG68274.1 | hmgA | SCAB_11061 | SCAB_72541 | Conserved hypothetical protein; Belongs to the pirin family. | Putative homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | 0.470 |
CBG68274.1 | hrdD | SCAB_11061 | SCAB_52911 | Conserved hypothetical protein; Belongs to the pirin family. | Sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.553 |
CBG68275.1 | CBG68274.1 | SCAB_11071 | SCAB_11061 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the pirin family. | 0.781 |
CBG68502.1 | CBG68274.1 | SCAB_13451 | SCAB_11061 | Dimethylarginine dimethylaminohydrolase. | Conserved hypothetical protein; Belongs to the pirin family. | 0.426 |
CBG72323.1 | CBG68274.1 | SCAB_52881 | SCAB_11061 | Putative oxidoreductase; PMID:7883183. | Conserved hypothetical protein; Belongs to the pirin family. | 0.513 |
gatA | CBG68274.1 | SCAB_27221 | SCAB_11061 | Putative glutamyl tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | Conserved hypothetical protein; Belongs to the pirin family. | 0.414 |
hmgA | CBG68274.1 | SCAB_72541 | SCAB_11061 | Putative homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | Conserved hypothetical protein; Belongs to the pirin family. | 0.470 |
hrdD | CBG68274.1 | SCAB_52911 | SCAB_11061 | Sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Belongs to the pirin family. | 0.553 |