Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG68297.1Conserved hypothetical protein (contains NHL repeats). (564 aa)    
Predicted Functional Partners:
CBG68298.1
Putative monooxygenase.
 
    0.962
CBG68301.1
Putative iron-sulfur protein; PMID:12819191; PMID: 1846297; many other streptomycete matches.
 
     0.651
CBG68296.1
Putative MarR family transcriptional regulator.
       0.645
CBG68299.1
Putative short-chain dehydrogenase.
 
    0.636
CBG68302.1
Putative P450-like protein; Belongs to the cytochrome P450 family.
 
    0.576
CBG68300.1
PUTATIVE FERREDOXIN REDUCTASE.
       0.572
CBG68304.1
Short-chain dehydrogenase.
  
    0.532
CBG69239.1
Putative RNA helicase; Cluster 0489 with SCAB65771.
  
     0.517
CBG69240.1
Putative helicase.
  
     0.502
CBG73361.1
Conserved hypothetical protein.
  
   
 0.493
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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